Paediatrics Prize Winner: The Neonatal Microbiome
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Aagaard, K., Ma, J., Antony, K. M., Ganu, R., Petrosino, J., & Versalovic, J. (2014). The placenta harbors a unique microbiome. Science translational medicine, 6(237), 237ra65-237ra65.
Aceti, A., Gori, D., Barone, G., Callegari, M. L., Di Mauro, A., Fantini, M. P., ... & Zuccotti, G. (2015). Probiotics for prevention of necrotizing enterocolitis in preterm infants: systematic review and meta-analysis. Italian journal of pediatrics, 41(1), 1-20.
Afrazi, A., Sodhi, C. P., Richardson, W., Neal, M., Good, M., Siggers, R., & Hackam, D. J. (2011). New insights into the pathogenesis and treatment of necrotizing enterocolitis: Toll-like receptors and beyond. Pediatric research, 69(3), 183-188.
Aho, V. T., Pereira, P. A., Haahtela, T., Pawankar, R., Auvinen, P., & Koskinen, K. (2015). The microbiome of the human lower air- ways: a next generation sequencing perspective. World Allergy Organization Journal, 8(1), 23.
Berg, R. D., & Garlington, A. W. (1979). Translocation of certain indigenous bacteria from the gastrointestinal tract to the mes- enteric lymph nodes and other organs in a gnotobiotic mouse model. Infection and immunity, 23(2), 403-411.
Borre, Y. E., O’Keeffe, G. W., Clarke, G., Stanton, C., Dinan, T.
G., & Cryan, J. F. (2014). Microbiota and neurodevelopmental windows: implications for brain disorders. Trends in molecular medicine, 20(9), 509-518.
Brandt, L. J. (2012). Editorial commentary: fecal microbiota transplantation: patient and physician attitudes. Clinical infec- tious diseases, 55(12), 1659-1660.
Brugman, S., Perdijk, O., van Neerven, R. J., & Savelkoul, H. F. (2015). Mucosal immune development in early life: Setting the stage. Archivum immunologiae et therapiae experimentalis, 63(4), 251-268.
Collado, M. C., Cernada, M., Baüerl, C., Vento, M., & Pérez- Martínez, G. (2012). Microbial ecology and host-microbiota interactions during early life stages. Gut microbes, 3(4), 352- 365.
Cong, X., Henderson, W. A., Graf, J., & McGrath, J. M. (2015). Early Life Experience and Gut Microbiome: The Brain-Gut-Microbiota Signaling System. Advances in Neonatal Care, 15(5), 314-323.
Donovan, S. M., Wang, M., Li, M., Friedberg, I., Schwartz, S. L., & Chapkin, R. S. (2012). Host-microbe interactions in the neonatal intestine: role of human milk oligosaccharides. Advances in Nutrition: An International Review Journal, 3(3), 450S-455S.
Dunlop, A. L., Mulle, J. G., Ferranti, E. P., Edwards, S., Dunn, A. B., & Corwin, E. J. (2015). The Maternal Microbiome and Pregnancy Outcomes that Impact Infant Health: A Review. Advances in neonatal care: official journal of the National Association of Neonatal Nurses, 15(6), 377.
Frykman, P. K., Nordenskjöld, A., Kawaguchi, A., Hui, T. T., Granström, A. L., Cheng, Z., ... & Wester, T. (2015). Character- ization of bacterial and fungal microbiome in children with Hirschsprung disease with and without a history of enterocol- itis: a multicenter study. PloS one, 10(4), e0124172.
Gibson, G. R., Probert, H. M., Van Loo, J., Rastall, R. A., & Rober- froid, M. B. (2004). Dietary modulation of the human colonic microbiota: updating the concept of prebiotics. Nutrition research reviews, 17(02), 259-275.
Goldenberg, R. L., Hauth, J. C., & Andrews, W. W. (2000). Intrau- terine infection and preterm delivery. New England journal of medicine, 342(20), 1500-1507.
Gritz E. C. & Bhandari V (2015). Corrigendum: The human neo- natal gut microbiome: a brief review. Frontiers in pediatrics, 3.
Gritz, E. C., & Bhandari, V. (2015). The human neonatal gut microbiome: a brief review. Frontiers in pediatrics, 3.
Hartz, L. E., Bradshaw, W., & Brandon, D. H. (2015). Potential NICU Environmental Influences on the Neonate’s Microbiome: A Systematic Review. Advances in Neonatal Care, 15(5), 324- 335.
Hunt, K. M., Preuss, J., Nissan, C., Davlin, C. A., Williams, J. E., Shafii, B., ... & McGuire, M. A. (2012). Human milk oligosaccharides promote the growth of staphylococci. Applied and environmental microbiology, 78(14), 4763-4770.
Indrio, F., & Neu, J. (2011). The intestinal microbiome of infants and the use of probiotics. Current opinion in pediatrics, 23(2), 145.
Jilling, T., Simon, D., Lu, J., Meng, F. J., Li, D., Schy, R., ... & Caplan, M. S. (2006). The roles of bacteria and TLR4 in rat and murine models of necrotizing enterocolitis. The Journal of Immunology, 177(5), 3273-3282.
La Rosa, P. S., Warner, B. B., Zhou, Y., Weinstock, G. M., Soder- gren, E., Hall-Moore, C. M., ... & Hoffmann, J. A. (2014). Pat- terned progression of bacterial populations in the premature infant gut. Proceedings of the National Academy of Sciences, 111(34), 12522-12527.
Lilja, H. E., Wefer, H., Nyström, N., Finkel, Y., & Engstrand,
L. (2015). Intestinal dysbiosis in children with short bowel syndrome is associated with impaired outcome. Microbiome, 3(1), 1.
Lin, P. W., & Stoll, B. J. (2006). Necrotising enterocolitis. The Lancet, 368(9543), 1271-1283.
Lissauer, T., Fanaroff, A. A., Miall, L., & Fanaroff, J. (2015). Neonatology at a Glance. John Wiley & Sons.
Ly, N. P., Litonjua, A., Gold, D. R., & Celedón, J. C. (2011). Gut microbiota, probiotics, and vitamin D: interrelated exposures influencing allergy, asthma, and obesity?. Journal of Allergy and Clinical Immunology, 127(5), 1087-1094.
MacFie, J. (2004). Current status of bacterial translocation as a cause of surgical sepsis. British medical bulletin, 71(1), 1-11.
Madan, J. C., Farzan, S. F., Hibberd, P. L., & Karagas, M. R. (2012). Normal neonatal microbiome variation in relation to environmental factors, infection and allergy. Current opinion in pediatrics, 24(6), 753.
McElroy, S. J., Underwood, M. A., & Sherman, M. P. (2012). Paneth cells and necrotizing enterocolitis: a novel hypothesis for disease pathogenesis. Neonatology, 103(1), 10-20.
Morrow, A. L., Lagomarcino, A. J., Schibler, K. R., Taft, D. H., Yu, Z., Wang, B., ... & Kennedy, M. A. (2013). Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants. Microbiome, 1(1), 1.
Musemeche, C. A., Kosloske, A. M., Bartow, S. A., & Umland, E. T. (1986). Comparative effects of ischemia, bacteria, and substrate on the pathogenesis of intestinal necrosis. Journal of pediatric surgery, 21(6), 536-538.
ESSAY PRIZE
TSMJ 2016 | 37
ESSAY PRIZE
Neu, J. (2014). Necrotizing enterocolitis: the mystery goes on. Neonatology, 106(4), 289-295.
Penders, J., Thijs, C., Vink, C., Stelma, F. F., Snijders, B., Kummeling, I., ... & Stobberingh, E. E. (2006). Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics, 1 (2), 511-521.
Peterson, J., Garges, S., Giovanni, M., McInnes, P., Wang, L., Schloss, J. A., ... & Baker, C. C. (2009). The NIH human microbiome project. Genome research, 19(12), 2317-2323.
Rodríguez, J. M. (2014). The origin of human milk bacteria: is there a bacterial entero-mammary pathway during late preg- nancy and lactation?. Advances in Nutrition: An International Review Journal, 5(6), 779-784.
Romano-Keeler, J., & Weitkamp, J. H. (2014). Maternal influences on fetal microbial colonization and immune development. Pediatric research, 77(1-2), 189-195.
Sanz, Y. (2011). Gut microbiota and probiotics in maternal and infant health. The American journal of clinical nutrition, 94(6 Suppl), 2000S-2005S.
Satokari, R., Grönroos, T., Laitinen, K., Salminen, S., & Isolauri, E. (2009). Bifidobacterium and Lactobacillus DNA in the human placenta. Letters in Applied Microbiology, 48(1), 8-12.
Schleifer, K. H., Hartinger, A., & Götz, F. (1978). Occurrence of D-tagatose-6-phosphate pathway of D-galactose metabolism among staphylococci. FEMS Microbiol. Lett, 3, 9-11.
Sherman, M. P. (2010). New concepts of microbial translocation
in the neonatal intestine: mechanisms and prevention. Clinics in perinatology, 37(3), 565-579.
Sherman, M. P., Minnerly, J., Curtiss, W., Rangwala, S., & Kelley, S. T. (2013). Research on neonatal microbiomes: what neonatol- ogists need to know. Neonatology, 105(1), 14-24.
Spencer, J., Dillon, S. B., Isaacson, P. G., & MacDonald, T. T. (1986). T cell subclasses in fetal human ileum. Clinical and experimental immunology, 65(3), 553.
Stewart, C. J., Skeath, T., Nelson, A., Fernstad, S. J., Marrs, E. C., Perry, J. D., ... & Embleton, N. D. (2015). Preterm gut microbiota and metabolome following discharge from intensive care. Scientific reports, 5.
Thomas, T., Gilbert, J., & Meyer, F. (2012). Metagenomics-a guide from sampling to data analysis. Microbial informatics and experimentation, 2(1), 1.
Till, H., Castellani, C., Moissl-Eichinger, C., Gorkiewicz, G., & Singer, G. (2015). Disruptions of the intestinal microbiome
in necrotizing enterocolitis, short bowel syndrome, and Hirschsprung’s associated enterocolitis. Frontiers in microbiology, 6.
Venter, J. C., Remington, K., Heidelberg, J. F., Halpern, A. L., Rusch, D., Eisen, J. A., ... & Fouts, D. E. (2004). Environmental genome shotgun sequencing of the Sargasso Sea. science, 304(5667), 66-74.
Wassenaar, T. M., & Panigrahi, P. (2014). Is a foetus developing in a sterile environment?. Letters in applied microbiology, 59(6), 572-579.
Aceti, A., Gori, D., Barone, G., Callegari, M. L., Di Mauro, A., Fantini, M. P., ... & Zuccotti, G. (2015). Probiotics for prevention of necrotizing enterocolitis in preterm infants: systematic review and meta-analysis. Italian journal of pediatrics, 41(1), 1-20.
Afrazi, A., Sodhi, C. P., Richardson, W., Neal, M., Good, M., Siggers, R., & Hackam, D. J. (2011). New insights into the pathogenesis and treatment of necrotizing enterocolitis: Toll-like receptors and beyond. Pediatric research, 69(3), 183-188.
Aho, V. T., Pereira, P. A., Haahtela, T., Pawankar, R., Auvinen, P., & Koskinen, K. (2015). The microbiome of the human lower air- ways: a next generation sequencing perspective. World Allergy Organization Journal, 8(1), 23.
Berg, R. D., & Garlington, A. W. (1979). Translocation of certain indigenous bacteria from the gastrointestinal tract to the mes- enteric lymph nodes and other organs in a gnotobiotic mouse model. Infection and immunity, 23(2), 403-411.
Borre, Y. E., O’Keeffe, G. W., Clarke, G., Stanton, C., Dinan, T.
G., & Cryan, J. F. (2014). Microbiota and neurodevelopmental windows: implications for brain disorders. Trends in molecular medicine, 20(9), 509-518.
Brandt, L. J. (2012). Editorial commentary: fecal microbiota transplantation: patient and physician attitudes. Clinical infec- tious diseases, 55(12), 1659-1660.
Brugman, S., Perdijk, O., van Neerven, R. J., & Savelkoul, H. F. (2015). Mucosal immune development in early life: Setting the stage. Archivum immunologiae et therapiae experimentalis, 63(4), 251-268.
Collado, M. C., Cernada, M., Baüerl, C., Vento, M., & Pérez- Martínez, G. (2012). Microbial ecology and host-microbiota interactions during early life stages. Gut microbes, 3(4), 352- 365.
Cong, X., Henderson, W. A., Graf, J., & McGrath, J. M. (2015). Early Life Experience and Gut Microbiome: The Brain-Gut-Microbiota Signaling System. Advances in Neonatal Care, 15(5), 314-323.
Donovan, S. M., Wang, M., Li, M., Friedberg, I., Schwartz, S. L., & Chapkin, R. S. (2012). Host-microbe interactions in the neonatal intestine: role of human milk oligosaccharides. Advances in Nutrition: An International Review Journal, 3(3), 450S-455S.
Dunlop, A. L., Mulle, J. G., Ferranti, E. P., Edwards, S., Dunn, A. B., & Corwin, E. J. (2015). The Maternal Microbiome and Pregnancy Outcomes that Impact Infant Health: A Review. Advances in neonatal care: official journal of the National Association of Neonatal Nurses, 15(6), 377.
Frykman, P. K., Nordenskjöld, A., Kawaguchi, A., Hui, T. T., Granström, A. L., Cheng, Z., ... & Wester, T. (2015). Character- ization of bacterial and fungal microbiome in children with Hirschsprung disease with and without a history of enterocol- itis: a multicenter study. PloS one, 10(4), e0124172.
Gibson, G. R., Probert, H. M., Van Loo, J., Rastall, R. A., & Rober- froid, M. B. (2004). Dietary modulation of the human colonic microbiota: updating the concept of prebiotics. Nutrition research reviews, 17(02), 259-275.
Goldenberg, R. L., Hauth, J. C., & Andrews, W. W. (2000). Intrau- terine infection and preterm delivery. New England journal of medicine, 342(20), 1500-1507.
Gritz E. C. & Bhandari V (2015). Corrigendum: The human neo- natal gut microbiome: a brief review. Frontiers in pediatrics, 3.
Gritz, E. C., & Bhandari, V. (2015). The human neonatal gut microbiome: a brief review. Frontiers in pediatrics, 3.
Hartz, L. E., Bradshaw, W., & Brandon, D. H. (2015). Potential NICU Environmental Influences on the Neonate’s Microbiome: A Systematic Review. Advances in Neonatal Care, 15(5), 324- 335.
Hunt, K. M., Preuss, J., Nissan, C., Davlin, C. A., Williams, J. E., Shafii, B., ... & McGuire, M. A. (2012). Human milk oligosaccharides promote the growth of staphylococci. Applied and environmental microbiology, 78(14), 4763-4770.
Indrio, F., & Neu, J. (2011). The intestinal microbiome of infants and the use of probiotics. Current opinion in pediatrics, 23(2), 145.
Jilling, T., Simon, D., Lu, J., Meng, F. J., Li, D., Schy, R., ... & Caplan, M. S. (2006). The roles of bacteria and TLR4 in rat and murine models of necrotizing enterocolitis. The Journal of Immunology, 177(5), 3273-3282.
La Rosa, P. S., Warner, B. B., Zhou, Y., Weinstock, G. M., Soder- gren, E., Hall-Moore, C. M., ... & Hoffmann, J. A. (2014). Pat- terned progression of bacterial populations in the premature infant gut. Proceedings of the National Academy of Sciences, 111(34), 12522-12527.
Lilja, H. E., Wefer, H., Nyström, N., Finkel, Y., & Engstrand,
L. (2015). Intestinal dysbiosis in children with short bowel syndrome is associated with impaired outcome. Microbiome, 3(1), 1.
Lin, P. W., & Stoll, B. J. (2006). Necrotising enterocolitis. The Lancet, 368(9543), 1271-1283.
Lissauer, T., Fanaroff, A. A., Miall, L., & Fanaroff, J. (2015). Neonatology at a Glance. John Wiley & Sons.
Ly, N. P., Litonjua, A., Gold, D. R., & Celedón, J. C. (2011). Gut microbiota, probiotics, and vitamin D: interrelated exposures influencing allergy, asthma, and obesity?. Journal of Allergy and Clinical Immunology, 127(5), 1087-1094.
MacFie, J. (2004). Current status of bacterial translocation as a cause of surgical sepsis. British medical bulletin, 71(1), 1-11.
Madan, J. C., Farzan, S. F., Hibberd, P. L., & Karagas, M. R. (2012). Normal neonatal microbiome variation in relation to environmental factors, infection and allergy. Current opinion in pediatrics, 24(6), 753.
McElroy, S. J., Underwood, M. A., & Sherman, M. P. (2012). Paneth cells and necrotizing enterocolitis: a novel hypothesis for disease pathogenesis. Neonatology, 103(1), 10-20.
Morrow, A. L., Lagomarcino, A. J., Schibler, K. R., Taft, D. H., Yu, Z., Wang, B., ... & Kennedy, M. A. (2013). Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants. Microbiome, 1(1), 1.
Musemeche, C. A., Kosloske, A. M., Bartow, S. A., & Umland, E. T. (1986). Comparative effects of ischemia, bacteria, and substrate on the pathogenesis of intestinal necrosis. Journal of pediatric surgery, 21(6), 536-538.
ESSAY PRIZE
TSMJ 2016 | 37
ESSAY PRIZE
Neu, J. (2014). Necrotizing enterocolitis: the mystery goes on. Neonatology, 106(4), 289-295.
Penders, J., Thijs, C., Vink, C., Stelma, F. F., Snijders, B., Kummeling, I., ... & Stobberingh, E. E. (2006). Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics, 1 (2), 511-521.
Peterson, J., Garges, S., Giovanni, M., McInnes, P., Wang, L., Schloss, J. A., ... & Baker, C. C. (2009). The NIH human microbiome project. Genome research, 19(12), 2317-2323.
Rodríguez, J. M. (2014). The origin of human milk bacteria: is there a bacterial entero-mammary pathway during late preg- nancy and lactation?. Advances in Nutrition: An International Review Journal, 5(6), 779-784.
Romano-Keeler, J., & Weitkamp, J. H. (2014). Maternal influences on fetal microbial colonization and immune development. Pediatric research, 77(1-2), 189-195.
Sanz, Y. (2011). Gut microbiota and probiotics in maternal and infant health. The American journal of clinical nutrition, 94(6 Suppl), 2000S-2005S.
Satokari, R., Grönroos, T., Laitinen, K., Salminen, S., & Isolauri, E. (2009). Bifidobacterium and Lactobacillus DNA in the human placenta. Letters in Applied Microbiology, 48(1), 8-12.
Schleifer, K. H., Hartinger, A., & Götz, F. (1978). Occurrence of D-tagatose-6-phosphate pathway of D-galactose metabolism among staphylococci. FEMS Microbiol. Lett, 3, 9-11.
Sherman, M. P. (2010). New concepts of microbial translocation
in the neonatal intestine: mechanisms and prevention. Clinics in perinatology, 37(3), 565-579.
Sherman, M. P., Minnerly, J., Curtiss, W., Rangwala, S., & Kelley, S. T. (2013). Research on neonatal microbiomes: what neonatol- ogists need to know. Neonatology, 105(1), 14-24.
Spencer, J., Dillon, S. B., Isaacson, P. G., & MacDonald, T. T. (1986). T cell subclasses in fetal human ileum. Clinical and experimental immunology, 65(3), 553.
Stewart, C. J., Skeath, T., Nelson, A., Fernstad, S. J., Marrs, E. C., Perry, J. D., ... & Embleton, N. D. (2015). Preterm gut microbiota and metabolome following discharge from intensive care. Scientific reports, 5.
Thomas, T., Gilbert, J., & Meyer, F. (2012). Metagenomics-a guide from sampling to data analysis. Microbial informatics and experimentation, 2(1), 1.
Till, H., Castellani, C., Moissl-Eichinger, C., Gorkiewicz, G., & Singer, G. (2015). Disruptions of the intestinal microbiome
in necrotizing enterocolitis, short bowel syndrome, and Hirschsprung’s associated enterocolitis. Frontiers in microbiology, 6.
Venter, J. C., Remington, K., Heidelberg, J. F., Halpern, A. L., Rusch, D., Eisen, J. A., ... & Fouts, D. E. (2004). Environmental genome shotgun sequencing of the Sargasso Sea. science, 304(5667), 66-74.
Wassenaar, T. M., & Panigrahi, P. (2014). Is a foetus developing in a sterile environment?. Letters in applied microbiology, 59(6), 572-579.
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Published
2016-01-01
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O’Dwyer, . M. . (2016). Paediatrics Prize Winner: The Neonatal Microbiome. Trinity Student Medical Journal , 17(1), 31–38. Retrieved from https://ojs.tchpc.tcd.ie/index.php/tsmj/article/view/1754
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